PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family AP2
Protein Properties Length: 199aa    MW: 21000.2 Da    PI: 9.3152
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17425053PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.2e-1491150155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+++GV++ k++g+++A+++d  s+  g  ++ k+++lg++  +e+Aaka++ a++k++g
  Sof015401  91 SKFHGVTRLKWSGKYEAHLWDnTSQvEGrkRKgKHVYLGSYVNEEQAAKAHDLAALKYWG 150
                79*******************666696675336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-1191150IPR001471AP2/ERF domain
CDDcd000183.45E-1391162No hitNo description
SuperFamilySSF541711.44E-1391161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-1292160IPR001471AP2/ERF domain
SMARTSM003807.6E-1892166IPR001471AP2/ERF domain
PROSITE profilePS5103216.29192160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
XSSHAAPACX XXXXXXXADA WAGEPAAAVA GAEAGGGGGE IAALDKQLAV VVVGGGEERR  60
PGGAGAASAG GGGGGKLVAE AMRKYAAPRS SKFHGVTRLK WSGKYEAHLW DNTSQVEGRK  120
RKGKHVYLGS YVNEEQAAKA HDLAALKYWG TGPNTKLNFN ISDYEKEIEV MKTMSQDEFV  180
AYIRRQSSCF SRGPHHTGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.156980.0bud| crown| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977550.15e-86PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ5YGP77e-40PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLK7THI56e-90K7THI5_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G022359_P012e-89(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-40AP2 family protein